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Hello dbcan devs!
Thanks for developing the dbCAN command line tools, and thanks for providing such helpful and detailed documentation and tutorials!
I'm using dbCAN to annotate CAZymes/CGCs/su…
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Prodigal penalizes predicting genes that are shorter than 250 bp (83 aa). As a result, Prokka is missing a number of short proteins that do exist in a closely related species. Any thoughts on how to d…
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Hi,
over the last years I've annotated several metagenomes using prokka and never had any (serious) problems with the output. A while ago during annotation of a new dataset with prokka 1.13.3 I've …
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I want a module with roary.
- [ ] Need to fix locustag for prokka - should be unique for each genome
- [ ] should have following options:
-p #cpus
-f output dir
-e optional prank thingy, yes/…
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Hello,
Thanks for developing this tool. I completed the annotation of some phages, but I don't know how to assign functionality to those ORFs. When I try to use the genbank file in RAST or PROKKA, th…
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I use your tool "Prokka" (version 1.10) with your the default rRNA predictor "Barrnap" mainly for metagenome-annotation (and am very happy with it).
As my metagenomes consist of bacterial as well as …
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Please I have been trying to setup a new genus database. I downloaded the new genbank .gbff.gz format.
running
prokka-genbank_to_fasta_db genomic.gbff.gz* > genome.faa
genome.faa returns em…
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The installation instruction currently do not indicate that the Pfam DB should be added to the HMM directory. I am also a little confused where the CLUSTERS.hmm file in previous releases of Prokka com…
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I am getting the not readable error with the following command:
`
Docker run staphb/prokka:latest prokka --outdir prokka-annotated/Streptomyces_atratus_RB108.fasta --prefix Streptomyces_atratus_RB10…
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I have been dealing with this tbl2asn bug for the last few days and I have also found that it works for some input files and not others. At first I found that prokka ran fine on a set of contigs creat…