-
Hello author,
It is impossible to create the protein embedding files because of an error while saving the file.
It seems the embeddings have different shapes and can not be saved together in a s…
-
Thank you so much for your rich and meaningful work!
In actually learning about this dataset, I came across some questions I would like to ask you, as follows:
Is it possible to give the initial str…
-
Is this the number of proteins, or the number of protein groups?
-
hgtector database -o db_dir/ --threads 16
Database building started at 2024-10-17 17:41:03.528510.
Using local file taxdump.tar.gz.
Reading NCBI taxonomy database... done.
Total number of Ta…
-
From Jason:
Is the tool very specific for only the NCBI DB format?
Problem: is organism reliably identified in the headers of proteins?
Retool for Uniprot protein headers? These seem to always con…
-
https://www.iedb.org/
* Start of B-cell integration?
* Annotate proteins with the epitope as candidates similar to motif annotation?
-
Congratulations on Your Open Source Release!
I'm excited to see your work on "SLAM: structure-aware lysine β-hydroxybutyrylation prediction with protein language model" available as an open-source re…
-
Hi
We ran DIA_spec_diaPASEF workflow and DIA NN output protein group files does not have protein name. However, if i run DIA NN without using FragP
[PG_output.xlsx](https://github.com/user-attachme…
-
Hi everyone,
Thank you for an amazing tool!
I am generating the 3Di structure of a protein sequence of interest to structurally annotate against Foldseek database.
Here are the codes that I am u…
-
Hi,
I'm trying to replicate analysis completed back in 2013 using an older version of Hyphy. The analysis I'd like to run would includes estimating distances for Fst using an ML approach under a G…