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Alex
Creating the last network (about Line 401) in the CFN_CCCN_FigureVignette_updated.Rmd file that you sent me gives the error:
> net.suid sessionInfo()
R version 3.5.0 (2018-04-23)
Pl…
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Especially transciption profile assays. Need a proper classification and axiomatisation.
Need new terms for single-cell assays, find classification + axioms.
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Discussed with @ValWood @RLovering
All annotations are to TFIIIA, TFIIIB and TFIIIC, which are general initiation factors.
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Add the ability to render the non-DNA glpyhs:
1) RNA
2) Proteins
3) Complexes
4) Small molecules
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* GO:0001104 RNA polymerase II transcription cofactor activity: only used in metazoa
merge into: GO:0003712 transcription cofactor activity
* GO:0001105 RNA polymerase II transcription coactivator…
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Request for the following terms, as discussed on the OBI call. More terms will be added to the spreadsheet as they are reviewed. The spreadsheet follows the same ROBOT template as the assay harmonizat…
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I'm not looking into these, but they look incorrect
O60318 MCM3AP | Germinal-center associated nuclear protein | | protein import into nucleus | | PINC | Homo sapiens | TAS | | 80 kda mcm3-…
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To make it easier to offer suggestions, I am first going to build a work environment anyone who uses the `master` repository follow.
# Setting the stage
I downloaded the Prochlorococcus metapang…
meren updated
6 years ago
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Based on http://www.genesdev.org/cgi/doi/10.1101/gad.1684008.
The authors show that the B subtilis DNA translocase SpoIIIE acts as a "wire stripper" to remove proteins from DNA as it transports DNA f…
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I notice that
GO:0003716 obsolete RNA polymerase I transcription termination factor activity
is obsoleted with the comment
This term is obsolete.
This term was obsoleted because it is essen…