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Hi,
I have found that `sourmash sig describe` returns an error if the signature file is located in a subdirectory that contains the string "sourmash". I am running sourmash version 4.8.5.
## Set…
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Hi Luiz, Titus,
I was wondering if you could please run a Wort query across all metagenomes for the Serratus people? I seem to have understood from your talk that the best way to ask for it is thro…
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Is this intentional?
https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/43caeba6833a7efbdacc98b3cfbf56ae8867110e/src/utils.rs#L651-L659
https://github.com/sourmash-bio/sourmash_plug…
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I have successfully installed and created conda environment for bactopia.
But "Bactopia datasets" is giving me error in downloading datasets
```
2024-10-19 21:04:29 INFO 2024-10-19 21:04:…
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Also need to add this feature to multiqc ... but would be helpful to get a summary of number of kmers and such per signature
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As mentioned [here](https://sourmash.readthedocs.io/en/latest/using-sourmash-a-guide.html#how-should-i-prepare-my-data) and [here](https://github.com/dib-lab/sourmash/issues/601) both khmer and sourma…
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ok, I've got the containment figure (figure 1) working with sourmash now.
The notebook is `containment/notebooks/containment-plot.ipynb` in the https://github.com/dib-lab/2021-paper-sourmash-gather…
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When all samples have less than `params.lowread_filter` reads, the pipeline errors at qiime_datamerge step. The ideal behavior should be the pipeline still finishes and produces report, but with a mes…
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Trying to run a multifastgather of genbank-viral-database against viral sequences (~56.000 fasta sequences)
When using 1 fasta sequence it does work and does not run out of memory, but I wanted it to…
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Dear Sourmash team,
Hope you are all good. I have a project where I have some shotgun metagenomics data of wild rodents.
I want to see if I can classify reads to plant genomes, to have an idea of…