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To whom it may concern,
Thank you for the templates to use on HPC :D
I'm triggering an R target pipeline on snakemake together with R docker image on singularity. The pipeline:
`#!/usr/bin/env …
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We don't necessarily need a full tutorial or anything, but it would be nice to have an example in the README that uses data files included in this repository. Maybe setting these up as a subfolder in …
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In my work environment I have to use a proxy. This causes some problems downloading software with qiime-deploy.
The environment variables ($http_proxy, $https_proxy, $ftp_proxy,. $all_proxy) are all s…
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It appears to be currently impossible to install qiime via bioconda (at least for me).
When i try to create a new environment named "qiime1" using ```conda create -n qiime1 qiime```, I get the erro…
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Hello,
We am looking to contribute a new classifier to the Qiime project. We
recently released Quikr (https://github.com/EESI/quikr,
http://bioinformatics.oxfordjournals.org/content/29/17/2096), and
…
ghost updated
11 years ago
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Dear All,
I have a problem running STAMP after installation. I created conda environment with 2.7 python version. and then installed it. However, I received the following error when I tried to run i…
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...like the [scikit-bio](https://pypi.python.org/pypi/scikit-bio) one
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**Improvement Description**
It's common to have hidden files (e.g. .DS_Store) in a directory that is being imported. The importers should ignore these files (currently they error).
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**In order to provide a smooth "one stop" data publishing experience for individual researchers, we will implement the following:**
- [ ] We move the tool to prod environment (so that archives prod…
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Right now, the biom table OGU ids consist of both taxa and KEGG ids. It would be nice if there were convenience functions to allow for conversions to gene tables or tensors -- it is nontrivial to imp…