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On creating a record related to Museum für Naturkunde, Berlin, I was able to manually lookup and add a creator institution with automated link to their ROR records.
However, when creating the reco…
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Hi @fafa13 ,
In the get_sequence function, the chromosome names that are returned may contain additional information. Indeed, in the following case the string following " " (dna_sm:chromo...) should …
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Hi,
I am trying to run BASALT on several assemblies from different but similar samples.
Say:
sample 1, with assembly1.fa SR1_r1.fq,SR1_r2.fq
sample 2, with assembly2.fa SR2_r1.fq,SR2_r2.fq
…
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### Additional Information
We run an intensive processing of about 1MB files stores on s3 bucket which are about 3MB to (now) limited to 30MB in size.
We typically run 3-5 processes concurrently o…
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### Description of the bug
The Sentieon DNAScope takes a flag `--model` which is expected to point to a file with a pre-trained model.
In their latest updates, the models are provided in `.bundle`…
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Circular DNA currently works by taking reference frame of structure, copying the first frame to the end, and then in optimization ensure use of "--hold-last-bp".
Circular DNA options should be in pla…
rty10 updated
3 years ago
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Hi there,
I don't have an issue as such, more a (hopefully) quick question about how Tombo determines whether a sample is DNA or RNA from the raw reads in this scenario below:
"If DNA or RNA sam…
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I have more than 100 fastq files to run STAR to align the reads.
I didn't specify a “--outTmpdir” parameter.
For the first 16 fastq files, good aligning results came out with the complete "star…
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## Describe the issue
Hi, this is not a specific problem with VEP tool but more understanding issue.
I have a variant in PTEN with HGVSc: NM_000314.8:c.634+5G>C which annotated via VEP command line …
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I'm doing the Algorithms for DNA Sequencing" course on Coursera. I wanted to view and download the lecture slides from Github. But when I click on the PDF files, they are not rendered and I'm also not…