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http://localhost:4000/
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example: https://pubmed.ncbi.nlm.nih.gov/37081487/
[pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls]( https://pubmed.ncbi.nlm.nih.gov/37081487/)
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### My command is:
simulator.py genome --ref_g $file \
--model_prefix ${Model_Output} \
--output ${output_dir1} \
--number 300 \
…
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Hi Dorado team,
I have performed dorado duplex calls, then from the resulting BAM file, I have used the below command to only compile a bam file consisting of duplex calls:
samtools view recovered…
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I've been asking for dorado benchmarks so I thought I'd contribute one too. I just put together a system with an AMD 7975X CPU, ASUS WRX90E motherboard, DDR5 memory, Sabrent 8TB SSD and an NVidia RTX …
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Hi,
I'm wondering if it's possible to use NanoMethViz to visualise RNA methylation data, e.g. using methylation probability output from m6Anet? Especially as ONT are now including m6A base-calling …
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Hi everyone,
I was an enthysiastic guppy user and, although i love dorado, i really miss the barcoding_summary.txt file that was produced during demultiplexing/barcode-trimming (and, as far as i've…
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Hi,
Do you have any plan to update the pipeline so that can be used for the new Nanopore RNA flow cells, as guppy Basecaller doesn't have any cfg file that can support the new flow cells. Instead N…
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Hi Shian!
I have a few UCSC aligned BAM files. UCSC uses a 0 based coordinate system unlike the Ensembl genome builds.
I have my ModBamResult object and I am trying to use modbam_to_tabix to ge…
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Hi, it is my first time to use Modkit to extract modified base signals but have some problems.
I use Dorado v0.7.1 to do SUP + modification calling (m6A,pseU).
I use minimap2 to align the unaligne…