-
Hello,
I followed the installation steps detailed on here:
https://gemini.readthedocs.io/en/latest/content/installation.html
Everything worked until the step to run the unit tests, running ba…
-
I am getting the following error when running fusion snakemake.
```
rule loose_fusions: …
f0t1h updated
2 years ago
-
Hello, thanks for your time and patience! I just want you to know that STAR is amazing! I've been working with Chimeras in RNA-seq in my Ph.D. and I have questions that I hope you can help to give me …
-
This issue is part of an effort to reconcile the current [structural_variant database model](https://github.com/cBioPortal/cbioportal/blob/87e5a228d80a31515bf1a3e762bd2d70db89d2fb/db-scripts/src/main/…
-
updates such as my recent effort to move everything to python3 take an amount of time that is super-linear with the amount of code.
We have a lot of un-used/little-used tools. I propose that we remove…
-
Hi team,
I have recently run sqanti3 with fasta as input, and the result table contains some duplicate isoforms.
I had a quick check and found it stems from the `corrected.gtf` file first, which …
-
Do the necessary plumbing so that MMseqs2 can be used for clustering. Evaluate those clusters on glycine7 and glycine33 in peptide space first. Compare histograms out cluster sizes to BLAST and usea…
-
**Background**:
* cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
-
--sjdbOverhang ReadLength-1 when building index, so the index in this file, is it made by 150 - 1 or some others?
if I want to use GRCh37_gencode_v19_CTAT_lib_Apr032020.source.tar.gz, how should I do…
-
Please provide as much information as you can:
* **Suggested term label:**
I want to annotate the process of duc1
In this study, we identified the previously uncharacterized S. pombe protein…