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Hi,
I have been assembling around 8 plant genomes which are around 340 Mb in size successfully with hifiasm using Hifi reads. But recently I assembled another genome which is somewhat large (420 Mb) …
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### Description of feature
Greengenes2 recently came out. Greengenes2 is a new release of the Greengenes database that has been redesigned from the ground up and backed by whole genomes, focusing on …
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### PR #1991
### Task Description
This issue is meant to connect a number of issues and provide a place for discussion. We are seeing a number of issues pop-up now that we are trying to publish…
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Hi there,
I am using your really cool piece of software to analyze a large dataset of genomes from a single species. The SchemaCreation pipeline worked without any issue (output attached), but the…
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I want to run the epic-effective for human genome hg38. I am using a 16 gb ram for it but after using the command it is showing memory error.
using the following command:
epic-effective -r 36 GRCh38…
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Dear developers,
I would like to try out Whisper for mapping paired end short reads against a very large and fragmented genome assembly (100s of thousands of contigs). It is inconvenient and a file…
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Hello,
I ran across SegAlign after talking with a collaborator who has had previous success using SegAlign to produce alignments in mammilian genomes for downstream comparative analyses. I am tryin…
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I'm working on scaffolding a HiCanu assembly for a shark species that has had duplicates purged. It was assembled with ~45x PacBio Hifi (Median length: 13,710 bp; Mean length: 13,590 bp; Max. length: …
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Hi, I got the following error when creating the wheat genome index
```
Build index for the reference.
Kmer length: 17, window size: 7
Reference file: 161010_Chinese_Spring_v1.0_pseudomolecules.f…
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Hi,
I'm working with the wheat genome which has very large chromosomes, exceeding the apparent limit of 536870912.
I had to use a csi index to index the bam file (samtools index -c).
> genome_f…