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I have the below plot (3x2 grid), but I did the analysis for each plot separately (hence the different % values on the axes). If I do all of M.cap in one analysis (see prcomp code below), how could I …
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Chi-squared with some sort of post-hoc test...?
@shellytrigg which lines of your [geoduck](https://github.com/hputnam/Geoduck_Meth/blob/master/RAnalysis/Scripts/DMR_stats_and_anno.Rmd) code should …
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- [x] Build a list of am fungi in Quercus and ecm fungi in Juniperus
- [x] Percentage of am vs ecm in each host
- [x] All beta diversity tables changed to be only as in text information
- [x] Ve…
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Dear all,
First of all, I am really fond of the approach developed by Songbird for differential abundance analysis: it would be perfect for my needs.
I have a couple of questions about its correct u…
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Hi Joey,
I was wondering if it would be possible to add the option to do a permanova on your NMDS distance data e.g., similar to the adonis function from vegan?
cheers and thanks for your work!
max
maxru updated
4 years ago
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I have data like this:
```
sample_id day temperature
113 D9 ambient
118 D9 ambient
127 D9 ambient
132 D9 ambient
151 D9 ambient
173 D9 …
kubu4 updated
4 years ago
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OUtputs:
Graphs, analyses, and summaries for:
prey richness
prey presence-absence PERMANOVA
by-species dot plot (Supplemental)
abundance-based PERMANOVA (for both mesocosm and field)
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Hello,
I have an experiment with a repeated measures design. I would like to use PERMANOVA to test the entire model - the vignette says adonis can handle a formula notation, but I am having problem…
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Hi there,
I am trying to run what is seemingly turning out to be a very large PERMANOVA by calling adonis in vegan in R 3.5.1. In the script, which I am running off of our institution's large serv…
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distillerycats is a generalization of a pipeline developed to perform an metaanlysis of IBD ([github.com/dib-lab/2020-ibd](github.com/dib-lab/2020-ibd)). The specific studies analysed and the disease …