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Dear Florian,
I successfully installed Price and all the dependencies and performed the tests with the supplied dataset. While attempting to run Price with my data I got the following error:
201…
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Hi all,
I get following error while executing Bam2CIT function (the same applies for gedi -e Price), while working on sorted, indexed BAM file that is otherwise just fine for any other task.
2018…
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In the below code, bamtolist checks whether the reads have a transcript matching the annotation:
```
nreads
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Hi!
We are doing riboseq analysis on some fastq files. We are using Fastp for adapter identification and removal. But, we are facing some problems. fastp is able to remove the adapter sequences onl…
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Hello,
I am trying to test proteoformer on some Riboseq data that I have. It seems like the PRICE.py is hanging at the Convert to assembly table features. I mean, that is unless it is supposed to t…
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I have encountered following error at the merging replicates step. Could anything be done about this?
![rp-bp_error2](https://user-images.githubusercontent.com/38792637/39374680-f2759604-4a4b-11e8-8a…
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Right now, the script is hard-coded to work with "cell-types" from the config file. It would be nice if it also handled samples (riboseq_samples" key) and conditions ("riboseq_biological_replicates" k…
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So far, we get BED12 files to import ORF structures into the genome browsers.
As a follow-up to Norbert's talk, it would be great to get additional genome browser tracks
such as
1. Coverage profi…
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https://github.com/dieterich-lab/rp-bp/blob/master/setup.py lists 'bio-utils==0.2.4' as a requirement, but https://github.com/dieterich-lab/rp-bp/blob/master/requirements.txt lists '0.2.5'
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PyStan outputs information about sampling times for each call to the sampler. This output is not useful for this project.
By default, it is difficult to suppress this output. This thread has some det…