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[Running_scTE_pipeline_output_error.txt](https://github.com/user-attachments/files/17848347/Running_scTE_pipeline_output_error.txt)
Hello @jphe @l1y1y @oaxiom @carmarpe,
I was wondering if any o…
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https://doi.org/10.1101/262501
> Recent advances have enabled gene expression profiling of single cells at lower cost. As more data is produced there is an increasing need to integrate diverse data…
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Hi, we have sequenced 5 samples' scRNA-seq in your company and when I got the data, I found that there are multiple directories under each sample and for each sub-directory, there are also two pairs o…
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Hi Dr. Zhang,
I read your Polarbear paper and planned to run the model on some multiomics data for the Human Brain to see how well your model performs on human brain tissue. Do you have a pretraine…
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Thank you for developing such a helpful tool. I would like to try to detect fusion genes using STAR-Fusion on 10X single-cell transcriptome data. The single-cell sample was a bone marrow sample from a…
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Hi~Dr, thank you for your package.
I would like to ask, beluga model is pre-trained with hg19, while the scRNA-seq data is mapped to GRCh38 genome version, so is it effective and appropriate to use…
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Hi everyone,
I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results.
Now I want to combine all the results and draw a heatma…
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Similar to #137, catch the existing GDSCN repos up to match AnVIL_Template's GDSCN styling, so they can smoothly receive future updates
- [x] jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL
- [x] jhudsl/GD…
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Thanks for the useful deconvolution tool. I am trying to use TED to deconvolute bulk RNA-seq data from tissues. And I used raw reads for scRNA-seq and expected counts generated from RSEM for bulk RNA-…
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Hi,
Thank you for your great tools for single cell multi-omics analysis. I successfully ran the cite-seq demo but failed to ran our scRNA+scATAC data with following error report:
The input …