-
#134 and #138 tried to clarify the tree sequence definition section, which I tried to merge into #141. In particular, this added the idea of a "ploid", which we explain before going on to talk about n…
-
Hello,
I have been trying to place them in the tree with pplacer but it fails for memory every time.
I have 512 GB of RAM on this node:
First run on 28 genomes:
slurmstepd: error: Job 9369956 …
-
## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/dualrnaseq pipelin…
-
Hello!
What is the run time estimation for the correction of the long reads? I used the default command for running Ratatosk `Ratatosk correct -v -c 90 -s short_reads.fastq -l long_reads.fastq -o o…
-
Talking about this with @andrewkern and @vsbuffalo. Currently, the "Chromosomal inversion" recipe of section 14.4 has a recombination callback that looks like this:
```
recombination() {
if (gen…
-
Hi again Arang!
I was wondering if you have any interpretation for the difference in k-mer completeness when using the solid k-mers which come from *spectra-cn*, compared to the hapmer version from…
-
### How to Reproduce
In the searchall plugin, click a link of a row that was found
### Expected behavior
data explorer is opened
### Observed behavior
> Invalid character found in the request…
-
Hi,
When i tried with few genomes, the below code works:
chewBBACA.py CreateSchema -i test/ -o C.jejuni_schema_test --ptf Campylobacter_jejuni_training_file.trn --cpu 6
test folder contains few…
-
@sammyjava says we need to clean this up; for example, the current taxid given is actually for hypogaea, and the current species name is "sp" which doesn't match the folder name GENUS. I thought the l…
-
I have the following instance of Sequencesever running:
SequenceServer 2.0.0.rc7 using BLASTN 2.10.1+
Stangely enough, perfect hits never reach 100% in the summary table of hits:
Query coverage (…