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Hello,
Trying some basic ProjectData get requests via the ICA SDK python.
I have a simple python script here:
Details
```python
#!/usr/bin/env python3
"""
Test get data object with…
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Hi everyone
I have been working with the National Institute for Communicable Diseases (NICD) on some of their SARS-CoV-2 sequencing. I adapted the "variation" workflow to call variants in Illumina …
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relates to https://github.com/microbiomedata/nmdc-runtime/issues/249
For some of the records the ingest code populated `instrument_name` with `Illumina Illumina HiSeq`. This is because some of the NE…
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2021-04-19 06:16:29 IST] Downloading iGenome in Download ONLY mode.
--2021-04-19 06:16:29-- ftp://igenome:*password*@ussd-ftp.illumina.com/Homo_sapiens/UCSC/hg19/Homo_sapiens_UCSC_hg19.tar.gz
…
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Dear developers,
I am currently working with miRNA-seq reads from Illumina platforms, whose length ranges roughly from 16 to 30 nucleotides.
Do you think bowtie can outperform other popular mapp…
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## Description
Currently sc2reporter is adapted to the output of the SARS-CoV-2 [pipeline](https://github.com/Clinical-Genomics-Lund/sarscov2-pipe) used by Lund. Within GMS, the [GMS-artic](https:/…
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Hi @freeseek
I note that there are some indel records that gtc2vcf initially writes them but then `bcftools norm --check-ref x` filters them out. However, I was comparing to the [Dragen array outp…
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We are working with common workflow language to build a standardised interface
for genome assembly software. This is being discussed in bioboxes/rfc#132.
Based on mapping out what this interface may l…
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Hello,
I've been using [bionode-ncbi](https://github.com/bionode/bionode-ncbi/blob/master/lib/bionode-ncbi.js) to get SRR ids from a `PRJ**` IDs so I don't have to look for each file individually (ex…
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I am interested in calling all the mismatches/conversions in my RNA modification dataset that is generated using Illumina TruSeq protocol (dUTP). I am using the JACUSA2 pileup method for this step. Si…