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Hi ... I would very much like to test your script ...but I do not seem to get it to work
I have complied it ate testing running with:
`BFCounter count --kmer-size=10 --num-kmers=10000 --threads=10 …
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Hi,
Thank you for developing this nice tool.
I have obtained hap1.fa and hap2.fa using hifiasm(HiFi +HiC reads). Next, I would like to evaluate the QV and completeness of each haplotype.
Howe…
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Hello,
while runnin the test suite for pyseer-1.3.5 I got this warning
```
RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode
```
see
```
gensoft@06b71d9a76fe te…
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Now:
1) Reads per barcode... numerically and graphically
2) Unmatched reads
3) Cut site reporting (histogram/heatmap of next 5mers...kmers optional k?)
4) Edit distance maybe?
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Hello,
Thank you for this wonderful tool. Would it be possible to ask for two small features?
We are using coverage histograms to estimate genomic properties. We have found cases where we had to…
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To address the issue of loading all kmer matrices in to memory for the model pipeline (both score and model rules do this) we can create background distributions from all kmers in a dataset. This coul…
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Hi,
I was wondering if it is possible to use my own sets of kmers during assembly?
Cheers,
Gaofeng
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So after trying to write some code interfacing `kmers` with some k-mers parsed using `needletail`, I realized we are storing the k-mers in the opposite order. In `kmers` the leftmost nucleotide is st…
rob-p updated
2 years ago
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## on which platform/server? (Windows? Windows Sublinux? MacOS? Ubuntu? etc.)
Linux
## MitoZ version?
3.6
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, o…
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I try to assemble herro error corrected reads with hifiasm 0.19.8
But the number of kmers seen a low number of times does not decrease as expected
Initial histogram in the log
[M::ha_hist_lin…