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### Description of the bug
-[nf-core/quantms] Sent summary e-mail to yperez@ebi.ac.uk (sendmail)-
-[nf-core/quantms] Pipeline completed with errors-
Error executing process > 'NFCORE_QUANTMS:QUANTM…
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Hi everyone,
when using the inverseKinTraj function to generate trajectories, the resulting paths contain self-collisions of the robot that make them infeasible in practice.
I tried using the AllBo…
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### Description of feature
The current implementation in the pipeline assumes that all `ERR*` ids are available via the ENA API. We fetch the metadata using the URL below:
https://www.ebi.ac.uk/en…
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Greetings,
I used the tool one year ago, and I used to insert an image to the email template.
and I used to insert a hyperlink to the same image.
i use this code
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Login
…
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Dear Nesvilab,
I am doing LFQ analysis for 96 samples. It did all the searches which took so long and then I received this error. Could you please help me what is the issue?
Exception in threa…
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### Description of the bug
The commands in the documentation on nf-co.re and in this repository are wrong.
On the banner on the right-hand side of , it says this pipeline can be run with:
```…
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### Description of feature
Currently we are always converting to mzML although some tools allow reading raw files (e.g. DIANN and I think even Comet)
We only need to make sure that the mzml statis…
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### Description of the bug
@jpfeuffer @daichengxin :
ProteomicsLFQ is failing with this SDRF: https://github.com/multiomics/multiomics-configs/blob/master/projects/additional-reanalyses/PXD007145…
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- Describe the issue or question:
I recently updated the whole FragPipe workflow ( all tools updated for V21.0, 8jan 2024).
Standaard DDA search runs repeatedly into error message after PeptideProp…
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If FACS or MACS is used to enrich for certain cell types using a marker(s), add enrichment markers to immunophenotype column in sdrf file (enrichment_protocol.markers).