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Hello,
I have a question regarding the use of normal samples in ScanNeo2.
According to the information provided in the data section of the wiki, it states:
"In addition, normal allows to specif…
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Hi:
Your neutral test in the cancer evolution is very impressive, now I have some question when applying the neutralitytestr in the real seuqencing data.
In the vignettes, the minimum and maximu…
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## Description
Negative controls require all reads linked to their housekeeper bundle and have the read counts added to the sample in statusdb and LIMS.
## Suggested solution
~~When we parse …
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I believe v6.1 includes only 4 section names:
- `sequencing` ; terms that relate to how the DNA sample was processed for sequencing.
- `environment` ; terms that relate to the environment from which…
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I attempted to analyze BCR sequencing data generated using the GEXSCOPE® Single-Cell Immune Receptor Library Construction Kit with the multi_vdj_full_len tool. However, I encountered an error during t…
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I’m trying to understand how to use the CSV template to populate the CARE-SM model with information from a typical sequencing experiment and was wondering if there is a showcase with examples of how t…
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Hi, in the graphShort session, is the required input file mitochondrial genome sequencing data or whole genome sequencing data?
I see a warnning:
Warning:` Please note that the SPAdes is not rec…
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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I am facing a problem with addSpecies and assignSpecies both commands in DADA2. I didn't get any species-level information for our data. I followed your standard pipeline (https://benjjneb.github.io/d…
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Hi Peng
I have many nanopore sequencing runs from an arabidopsis strain with fail and pass data. I was wondering if it is better take all the data, only pass data or only data from the same sequen…