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I tried to run the oracle_fdw regression tests using PostgreSQL 16 and the [docker container for Oracle database 23ai ](https://container-registry.oracle.com/ords/f?p=113:4:9851618742311:::4:P4_REPOSI…
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Hello,
Could you please tell me how long does it take to complete a run? I am running ColorMap with 10M PacBio reads and 2512M Illumina reads.
Thanks.
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Hi,
I am doing a denovo assembling a nanopore data of R7.3 chemistry. At first I converted the fast5 to fasta using poretools. After that I followed the pipeline, for the denovo assembly using minima…
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Hi lh3,
I have minimap output, but no minisam output. The error may be because the first step of minisam: read 0 hits; stored 0 hits and 0 sequences.
Can you help to figure out the problem? Thank yo…
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Hi,
I have tried polishing an assembly with short-reads (HiC reads with -unpaired option in cfg) and long-reads (nextdenovo error corrected reads). But is taking longer than expected (before 5 iter…
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### Description of feature
As originally raised by @d4straub on [Slack](https://nfcore.slack.com/archives/CE6SDBX2A/p1684495819945059), a big issue in metagenomics/microbiome research is insufficie…
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I ran the QC and alignment modules on my own data with hg28. My original reads are 75bp single-end. After QC, I get most (>90%) of the reads with length >60 bp.
```
#The length distribution of the…
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```
I have been using STAR with Illumina 101bp paired end reads. The first set of
libraries I sequenced work great going through the pipeline, but I have had a
very strange problem with the most rec…
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Hi,
I am trying to assemble the genome of a worm, and I was hoping that minipolish would detect the mitochondrial genome and output it in the gfa file.
I have sequencing one of my worm species a l…
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Hi Alex,
I am working on getting human endogenous virus expression in single cell sample set using STARSolo and further downstream analysis. I have set up the work flow as follows:
1. Building th…