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HPC dissections have been performed for Br6432, Br6423, Br2743, Br2720 and Br3942. For all 5 of these brains, slides have been made for QC by H&E staining and RNAscope for the 4 subfield markers. Addi…
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### Project short name:
CerebellarDevLandscape
### Primary Wrangler:
@ipediez
### Secondary Wrangler:
### Associated files
* Google Drive: https://drive.google.com/drive/folders/1zGQpeqRoySCgX…
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Hi, we are using LIGER-UINMF to integrate snRNAseq data across species. We have found that no matter how low we make the unshared.thresh variable, no unshared genes are identified unless unshared.thre…
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I have two snRNAseq integrated datasets that were analyzed slightly differently and would like to find the cluster of cells that I have been working with in one dataset (dataset-1) in the other datase…
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Hi,
Wonderful tool!
I can launch the example shiny app from within Rstudio.. by doing something like this:
```
library(Seurat)
library(ShinyCell)
getExampleData() # Dow…
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Is there something wrong with :-
`indprog_jaccard_vivovitro (nmf_meta_sig_scrna$meta1)
CRLF1 NGFR PMEPA1 COL8A1 GAP43 GFRA2 NEFL PDLIM7
1.0000000 1.0000000 1.00000…
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Hello,
i am hoping someone can help me soon..
i am struggling with my snRNAseq data analysis using Seurat.
i have in total four objects: two are wildtype condition, two are treated group. i…
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Hello there. I've been thinking a lot lately about Dask and scRNAseq analysis so I'm excited to give this a try! We have a ton of data to analyze and most tools aren't able to scale well enough, so ha…
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Affected subgraphs:
- `02e69c25-71e2-48ca-a87b-e256938c6a98`
- `39fdb0ae-9a00-4829-a581-e7cb59798f02`
```
[WARNING] 2021-07-03T06:50:53.305Z b99eb884-079c-54d6-b9f0-e1de0d7d6b0b Worker failed to han…
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Hi,
Thank you for this great package. I recently tried your package for deconvolution and want to use it on our HPC. However, as hpc does not allow us to use docker image, a singularity image is a…