-
Hi VS2 team,
I am running VS2 on a large file (contigs from metagenomes) and I got this issue:
**This is the error:**
2/lib/python3.10/site-packages/virsorter/./scripts/provirus.py iter-0/dsD…
-
Hi, @linxingchen
According to issues #2, #22, and #27, I think maybe I can extend the virus contigs with COBRA then binning the new contigs with binner tools like vRhyme to get virus genomes?
-
When searching for fusion genes using Arriba with a custom GTF file that extracts only the representative Ensembl ID transcripts, a large number of false positives (mostly transcripts fused at interge…
-
Hi,
I am using metatranscriptome data to identify bacteriophages using the vs2 tool. The problem is that I am unable to understand how to know, which virus is identified from the viral contigs. Al…
-
Hello,
We are running through the tutorial for the linear mixed model and are having some issues.
We downloaded the data from [FigShare](https://figshare.com/articles/pyseer_tutorial/7588832), …
-
Hi, Virbot is a covenient tool to find RNA viruses in the assembled contigs quickly. I used it to quick-check the viruses in the sample. But here may be some small demands from me or other users.
…
-
Hi,
thanks for making this available it seems like a very useful pipeline. The last few days I tested it a bit, mainly for running viral classification and wanted to share some issues I encountered.…
-
Hi,
PhaGCN seems take each contig in a fasta file as a viral genome, and outputs classification result for each contig in a fasta file. Then, an issue will occur when the input file is a viral bin, …
-
Thanks for making such a great tool! It's super easy to run and exactly what I need for my project.
Can you explain what the difference is between "Unclassified" and just "Viruses" in the taxonomy …
-
https://www.nature.com/articles/s41467-024-46265-0
Adding this for curation because it doesn’t exist on BugSigdb and I believe it should be curated