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Hi @fenderglass and @aysegokce , this is Khi Pin. I've been trying to implement v0.1.2 in my WDL workflow (set to go public sometimes this month), but I've been running into errors where v0.1.1 had no…
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Hi,
I have a question about your algorithm usage.
Your algorithm is a signal-based approach. When you translate the genomic region of interest into the expected signals by the k-mer pore model,…
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I am running sawfish-v0.12.2 on this bam file https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG002/analysis/aligned_reads/hifi/GRCh38/HG002_aligned_GRCh38_winnowmap.sorted.bam …
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Hi there,
Thanks for developing this tool!
I was trying to run minimap2-aligned BAM files with Sawfish and encountered an error saying 'no rq tag'. I checked PacBio's doc and found it is the tag…
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Hi !
I am running this script in a HPC:
#!/bin/bash
module load apptainer/1.1.4
SOUPORCELL_DIR=/mypath/test
BATCH=${1}
SAMPLE=$(echo "$BATCH" | cut -d"_" -f1)
REF_DIR=/tmp/souporcell/re…
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There are a number of ways to define or identify _recurrent_ mutations. The purpose of this issue is to discuss how to define a "recurrent mutation" throughout the project, with some acknowledgment th…
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Hi,
I compared the results that I obtained using vibrant contigs before and after running phamb using checkv
Before
|checkv_quality |n| mean |sum |max|
|---|---|---|---|---|
|Complete |557 |46…
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Hi, Dr Li.
I installed transflow on ubantu 22.04 using mamba. When i ran transflow.sh, i got error as follows. Could you help me to solve this problem? Thanks !
(transflow) plf@plf-linux:~/transfl…
lsplf updated
10 months ago
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Hi Jeremy--
Many thanks for helping me out with the uploading of files to the Virtual Box. I've managed to figure that out.
I was doing a preliminary run for nonLTRs using MGEScan-nonLTR and rec…
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Hi Satria,
Thanks for the great package. I'm having difficulty clustering gbks from MIBiG.
I made an input folder, downloaded MIBiG, and placed the gbks in the input folder.
```
mkdir -p bigsl…