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Hello there, using the sample dataset I run the test run in order to see if all works, but not.
Here the command and the output i get:
> ./tools/bin/bpipe` necklace.groovy data/data.txt`
WARNING…
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It would be really nice to be able to restart ipyrad from the middle of a step rather than having to restart the entire step.
This is probably most important on Step 3. For example, I was running i…
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I am using funannotate 1.8.9 version installed with conda (mamba).
"funannotate compare -i Genome_one.gbk Genome_two.gbk Genome_three.gbk -o compare --cpus 4 --outgroup botrytis_cinerea.dikarya
--…
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Hi there,
I really like this concept. However, I am trying to make sense of my results. After plotting PC1 and PC2 for Ceratocystis fimbriata proteome. I observed clustering with very un expected …
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...takes too long to complete and fails.
1. Put a limit on the input for clustering and show a clear message to the user.
2. See if we can deploy clustering on better machine.
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Dear sourmash-bio team,
this is a feature request.
Unlike nt-genomes I am comparing protein based minhashes.
Here, every single protein of one species and its corresponding minhash is compared to a…
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**Versions**
poppunk 2.6.0
pp-sketchlib 2.1.0
**Command used and output returned**
Running poppunk in a conda environment in WSL2-Ubuntu
1206 genomes from one bacterial species (had already…
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Dear Community,
I've been attempting to run Trinity unsuccessfully. My first attempt involved using the reads in *fq.gz format, however the file decompression using own Trinity scripts did not wor…
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I successfully analysed the example files with RunTheta, however when I tried to analyse my sample it produces an error. I have the normal and primary tumour whole exome sequencing bam files. I create…
SNRNS updated
6 years ago
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Hi Ben,
Apologies for the multiple questions. I ran singlem separately on my metagenome reads and my MAGs. I then separated each marker and clustered them using the default species-level identity. …