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## Expected Behavior
tests pass
## Current Behavior
```
- 14:56:11.112 INFO: Search results will be written to query.hhr
- 14:56:11.167 INFO: query.a3m is in A2M, A3M or FASTA format
-…
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Hi,
We have deployed our own MMSEQS2 server on a p4d.24xlarge AWS instance, running the server with all data residing in memory post vmtouch command and using the Alphafold2_batch.ipynb notebook t…
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Hi,
I am trying to install Alphapulldown2.0 following your documentation. Unfortunately, I am still not able to run a single test because every time I get an error about something missing in my dat…
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I downloaded the alphafold weights from https://storage.googleapis.com/alphafold/alphafold_params_2022-12-06.tar
Running the docker with
```
docker run \
--gpus all \
-v /scratch:/data \
-v …
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Dear ESM Team
I have been trying to install ESM fold on a local server. I used the conda environment file and made sure my g++ is between is satisfied (tried with 10, 9 and 8). However, when it co…
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I wonder if there should be special settings to the standalone version to match the results of the server.
Please replicate the situation with this [PDB](https://alphafold.ebi.ac.uk/entry/P64850) sea…
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* PIGT version:
* Python version : 3.10.12
* Operating System : linux
### Description
I am installing the package using commands in the tutorial but got stuck while using make environment.
I …
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Hi, as mentioned in #135 , even when I am trying to run sequences of length 300-350 residues, an HHBlits error continuously causes AlphaFold to exit without results and print warnings:
```
I0803 0…
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Hello,
I think I've found an annoying bug that makes HHsearch v.3.x barely usable.
The description below relates to the latest HH-Suite version (and possibly to all the v.3.x releases).
## Expe…
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I've been trying to get this installed but it consistently fails at installing Openfold. Following the readme (I had to manually install the packages listed in environment.yml) it all works OK until I…