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Hi,
I'm using breseq to call mutations in populations resulting from a lab evolution experiment. I encounter some mutations in intergenic regions, listed by breseq as geneX/geneY . In the column gene…
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Hi there,
I am hoping to use InSilicoSeq to simulate exomes.
I have been able to simulate them, however after processing ~60% of the reads in my BAMs are removed as duplicates by Picard. Do you …
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### Title
16s Metagenomic analysis of Gut Microbiome
### Leaders
Dipankar Bachar
### Collaborators
_No response_
### Brainhack Global 2022 Event
Brainhack Marseille
### Project Description
1…
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Hi Joe
I have run analyzeGenomes with 43 gbff files downloaded from ncbi, as given below. I checked the blast dir. Files 1_-VS-_35.out and 1_-VS-_37.out are listed but the file 1_-VS-_36.out is miss…
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Dear developer!
I used 1085 resequenced individuals to extract non-reference sequences through Popins2 assemble, but when I use Popins2 merge, it shows "Segmentation fault (core dumped) popins2 mer…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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Hi Joe
Thank you putting up this resource.
1. I have a number of genomes (.gbff) downloaded from ncbi. I have renamed the sequence with the accession GCF_000833605.1_Anoxybacillus_ayderensis.gbff…
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Hi , I am having an issue running this barcode, it does not have alot of reads, so it could be that no contigs will be assembled, but I just wanted to double check with you. I am doing metagenomic vir…
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Hi @jaebeom-kim,
I'm attaching a FASTQ file with sequences from a public dataset; applying Kraken 1 or Kraken 2, these are
getting classified as 'Kovacikia minuta' at the species level. The datase…
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I use the latest `canu` release under Red Hat Enterprise Linux release 8.6 with slurm 22.05.7. I used this script:
`/home/fk8jybr/program/canu-2.2/bin/canu -p 0.070 -d /project/denolen/output/canu-…