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I am using `fst` version 0.9.8 with R-4.3.2.
I am writing 'data.table' class data frames in a `for` loop. The tables have different number of rows as they are the result of in-silico chemical modi…
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There is a performance regression for tantan repeat masking on Mac (both ARM and Intel) that becomes apparent when masking is applied to many short input sequences. The regression occurs at some point…
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Hi there,
I do run SearchGUI and peptide-shaker in a per-sample basis in our linux server.
Since I have more than 500 metaproteome files, is there any way to merge the results of proteins or p…
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Splitting adding linting to our vibc-core repo into two issues, since it seems like fixing the issues is going to be a non-trivial amount of effort.
This ticket just tracks adding a `lint-write` and…
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It would be nice to have a high level API to generate (tri/tetra/X)peptides for calculations with Gaussian
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### Description of the bug
Im processing a dataset using proteomicsLFQ and it fails when it found empty list of peptides in one of the idXMLs.
```
TOPPBase.cpp(1605): Value of string option 'kee…
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Hi developer,
thank you for this nice tool! I wonder does it limit the size of faa file for input?
when I enter a long sequence, it turned out error like:OSError: [Errno 36] File name too long:
How…
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### Paper:
[Use of gasotransmitters for the controlled release of polymer-based nitric oxide carriers in medical applications - ScienceDirect](https://www.sciencedirect.com/science/article/pii/S016…
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Hi,
We are performing glycopeptide identification and quantification across many samples. The data in the "assigned modifications" column of the "combined_modified_peptide.tsv" file gives only the …
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Conceptually similar in some ways to what happens in pVACvector. In working with peptide manufacturers, there is sometimes a case where the manufacturer wishes to add a few (e.g. 1-3) amino acids to…