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Hello,
I have installed q2-mOTUs on q2-2023.2 (and also tried q2-2022.8) as instructed. The installation proceeded to the end, but the motus pligin is not available in qiime.
I have attached the…
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**Bug Description**
FAILED q2_metadata/tests/test_tabulate.py::TestUsageExamples::test_examples
**Steps to reproduce the behavior**
I wanted to upgrade the Debian package of q2-metadata. You can…
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ERROR: Failed building wheel for scikit-bio
Running setup.py clean for scikit-bio
Successfully built sourcetracker
Failed to build biom-format scikit-bio
ERROR: Could not build wheels for biom…
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I've tried installing within qiime2-2019.7 conda environments both on a cluster (barnacle) and on my local machine, I get the errors when I try to refresh the cache. I've also tried install mmvec alon…
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**Current behavior:**
Sequences in `TMPDIR` are downloaded and saved as raw `.fastq`.
**Proposed improvement:**
Because of `pigz` in main `qiime2` environment sequences can be efficiently archive…
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**Bug Description**
I'm getting a `ValueError: unsupported format character 'T' (0x54) at index 3312` when creating environment from environment file. In particular, this version: `qiime2-2022.11-py…
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Hello Simone,
i started directly from fastq using this command:
nohup ./MetONTIIME.sh /home/as/MetONTIIME/fastq_pass/barcode01/ /home/as/MetONTIIME/sample-metadata.tsv /home/as/MetONTIIME/silva_…
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### Description of the bug
Pipeline finishes with no plots/analysis with qiime2 (e.g. ancom, barplot, rarefacation_tables) only taxonomy folder present. The software dump process fails but assume p…
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## Short description of the problem
Conda install (`anvio 7 hdfd78af_1 bionconda`) on Ubuntu 18.04.6 produces the following error:
```
$ anvi-self-test --suite mini
Traceback (most recent ca…
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Hi there, have had a few new issues with latest version and now am stuck on the final issue.
nextflow.config:
```
process {
executor = 'slurm'
queue = 'defq'
}
params.dada2_cpu="256"
p…