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**Describe the bug**
tmp_DCC files didn't get combine to generate 4 output files i.e CircRNAcount, CircCoordinates, CircSkipJunctions and LinearCount
# Command line used for the command
circtoo…
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Dear developers,
I have run HiTE and output multiple files. These include HiTE.out and HiTE.detail.tbl, but I manually checked the number of sequences in HiTE.out and found it was inconsistent with t…
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Hi Shujun,
Thank you very much for providing EDTA to the world.I have installed the latest EDTA v2.2.1 using conda and run the test file successfully. However, when I ran my own data, I encountered…
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Good afternoon! Please, could you help: I have a large Avena genome, which weight about 3 Gb. When I run ReasonateTE, this program takes just a huge amount of time. Could you gave me a clue how to inc…
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suggestion: put all required software into docker containers/user existing docker containers for all pipeline steps. I can help with that.
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Hello, I have been trying to find repeats using Repeatmodeler. It kept dying at a particular point, I have had to install afresh severally with no success.
Find below the log file
```
Build…
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Hi,
I just got the count matrix from TElocal.
I would like to compute the TPM to perform within-sample comparison but the matrix is a mix of genes (I got ensembl ID, from annotation provided wit…
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Hello,
I am attempting to run Valor on a non-human dataset for which no default Sonic file is available.
I thus followed the guidelines on Sonic's GitHub page and created my own file. I generate…
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Hello,
I am trying to implement the FASTiCLIP package to analyse my data. However, I can't seem to get things to work with the example. There are a series of errors and the script aborts after arou…
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Hi,
Thanks for putting this together.
I'm following your example to do a test run, with one of my own genomes. I got the following error:
```
mamba activate genomeAnnotationPipeline
OUT_DIR…