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Recent versions of STAR can merge overlapping pairs of reads into a single read for alignment. One drawback is that it makes it hard to calculate insert size with existing quality control tools which …
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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Dear Ben,
Thanks for this great tool.
I have tried to use it recently to map small RNAs to virus genomes. I was expecting 21 nt long reads to map, indicating that host immune system responded t…
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### Description of feature
Currently, starting pytest takes ages because it doesn't collect the tests that fast or seems to download something. I don't really know what's going on.
I think this …
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Hello Tobias,
## Summary
I wanted to propose a new Alleyoop that I would eventually incorporate into a pull request, if you approve of the addition. The idea is for it to take the output of `all…
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Project Lead: @homo-sapiens34
Mentor: @luispedro
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few weeks …
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Hello, thanks for providing such an amazing tools!
I noticed this tool is available for bulk RNA data. But since the scRNA-seq data is much more large and sparse, I don't know whether it can work w…
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Hi dropseqpipers,
I have downsampled some single cell data to test for the quality of the results using the same number of reads per cell. I have given each of my 100 cells 10,000 reads in the fa…
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I update several settings to let the vcf pipeline share the same docker container with RNA pipeline. The update is in the update_docker branch.
@amcooksey , could you check if the new Docker settings…