-
Hi folks,
I am working on some barcoded sequencing dataset available publicly and I am having problem calling consensus reads for the majority of samples (50 out of 80 samples). It seems that the …
-
I'm impressed by how cleanly `mccortex` installed and runs!
I got these warnings in `thread`
```
[16 Apr 2016 12:18:33-LOx][generate_paths.c:422] Warn: Reads may overlap in fragment: 151 + 151 > fra…
-
We have a bact. with nasty 35-40kb repeats. The genome is about 6.8Mb in size. The four SMRTcells we sequenced give about 3 Gb of raw data.
Do you have some hints for the parametrization in nominal.i…
ghost updated
8 years ago
-
urgent due to writing paper.
Is there a missing relationship between these two terms?
GO:0031509 telomeric heterochromatin assembly
The assembly of chromatin into heterochromatin at the telome…
-
This fails. The alignment gets corrupted by the node flipping process that's used to prep the graph for partial order alignment. (To be pushed soon as a test:)
``` bash
vg align -s AGTCCTTGAAAGAGGGCA…
-
Hi,
I use spades for hybrid assemble with illumina reads and Pacbio Sequel reads. It reports the warnings as below:
```
=== Error correction and assembling warnings:
* 32:42:52.332 107G / 311G…
-
The current definition of microsatellite
A repeat_region containing repeat_units of 2 to 10 bp repeated in tandem.
VNTRs should be minisatellite , because the term is usually used for repeats lo…
-
Hi Cyriac,
with the previous version of vcf2maf I had no problem annotating hg19 vcf even with vep 82, but with the current 1.6.3 I am getting this error... I was trying to figure out if zoo make some…
-
With `-Wall -Wextra`:
```
DB.c:882:15: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fscanf(istub,DB_NFILE,&nfiles);
…
-
Hi All, I'm have trouble running this lobSTR-workflow.cwl example. It says a docker image can't be found. Any advice on this?
https://gist.github.com/mr-c/ca5a39973f0c5783f636#file-initial-report
Th…