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...for reproducibility's sake, yo.
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When things run successfully, print the output location so the user isn't confused about where things went.
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I'm trying to write a profile to run [this workflow](https://github.com/legend-exp/legend-simflow) on [NERSC's supercomputer](https://docs.nersc.gov/jobs). Batch computing nodes have 128 CPU cores (x2…
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**Snakemake version**
7.17.1
**Describe the bug**
When using workflow modules that are hosted remotely, the individual cluster execution subprocesses attempt to access environment def…
BEFH updated
5 months ago
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Before the start of the hackathon, we need to promulgate a set of expectations and guidelines for how the other working groups should plan to make their work reproducible. This will include:
* expec…
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**Snakemake version**
* 5.30.1
**Describe the bug**
Job SUCCESS with slurm but Snakemake waiting for file very long time and fail. Latency-wait option up to 420. We reproduce this bug on 2 differ…
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Currently it is possible to adjust resources based on which `attempt` of a job is being run. Jobs fail for different reasons - timing out requires a different solution to out of memory errors. A neat …
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In addition to artifacts and programs, the anvi'o docs now supports workflows following the PR #1977.
Adding a new workflow is quite straightforward, and every file that needs to be edited to add a…
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Hi everyone,
I am having trouble using this pipeline apparently at the step of cutadapt.
For my analysis I submitted already trimmed fastq files, and so I left empty the adapters field in units.…
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I use snakemake mostly for automating jobs on remote infrastructure. I pretty routinely find myself writing small (1-2 rule) workflows. At the moment, I have to spread the logic for these workflows ac…