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Hey rprops,
Thanks for the codes!
I keep getting the following error when I run make.biom:
[ERROR]: Bacteria;Firmicutes;Firmicutes_ is not in taxonomy tree, please correct.
What might be the…
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New error when running taxonomy
**Command:**
cd $tmp
in_dir=/projects/cmi_proj/blood_microbiome/niaid/combined
out_root=$in_dir/shogun
align_dir=$out_root/wol_alignments
taxonomy=/projects/c…
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I am receiving a "segmentation fault" error when I try to run DEICODE auto-rpca. I've tried running it both in QIIME2 and standalone, with the standalone as the most recent version installed with con…
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Generating proteomic databases from 16S rRNA / taxonomy data.
TOOL IDEA:
Given that most of the metagenomics studies are based on 16S ribosomal RNA-based taxonomy identifications, a tool availabl…
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Trying to run CAMISIM to generate a very small test metagenome data set with a mixture of eukaryotic and prokaryotic genomes to test a pipeline with, following the example in the usage guide. I am get…
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They're a bunch of warnings for `Datatype class not found for extension`
```
root@sn06:~$ journalctl -u galaxy-zergling@0 --since "24 hours ago" --no-pager | grep -i "Datatype class not found" | …
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Hi:)
Hello, I am very interested in the tool SHOGUN and want to use SHOGUN for functional annotation.
However, I met some problems because my taxonomy is made with Kraken2 and bracken2.
1). I …
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With a fresh QIIME installation in a virtualenv via `pip install -e .`, the uclust and FastTree executables that are automatically downloaded and installed by setup.py produce the following errors:
…
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I was switching from storing a result in a variable to having a lambda function calculate the value (`i_present `-> `get_i_present`, `present` -> `get_present`). When typing `(vals)` after `get_i_pres…
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Hi,
The install instructions in INSTALL.md are outdated.
More specifically, any modern Linux distribution has python >= 3.9
It might be possible to create a conda environment with python 3.6.7 …