-
Hello,
I want to run a Multivariable MR (MVMR) using local GWAS summary stats for my exposures. What is the best way to read in and prepare the exposures?
I don't think I can use the mv_extract…
-
Hello, Do you have any information about the file format for GWAS summary and eQTL summary statical data? thanks
-
Hello,
do you recommend using this software for metabolite QTL summary statistics. In my scenario I have 3 related traits I am looking into in the same cohort and doing QTL analysis on each of them…
-
Dear Developer
Thank you for developing this software.
I'm trying to run example datasets given pleiofdr.
I'm getting an error regarding Manhattan plot generation stage.
```
Error-
#############…
-
Hi,
I am running ldsc with two summary statistics of trait1 and proxy for trait1 with completely non-overlapping european study samples (N1 = 900k (publishded meta-analysis), N2 = 180k (one sample…
-
Hi all,
I want to run a post-GWAS analysis using `COJO` and keep getting the error:
Error: invalid sample size in line:
"22 rs62224609 16051249 C T 0.0971188 -6.…
-
Hi there,
I keep getting this error and I'm not sure why its occurring. Any help would be appreciated!
Conversion finished at Mon May 14 08:19:21 2018
Total time elapsed: 4.11s
Munging of Trai…
-
Studies from PMID 36635386 are appearing in the[ unpublished sumstats table](https://www.ebi.ac.uk/gwas/downloads/summary-statistics) with NA in author and title, but they are published. Please remove…
-
## 1. Bug description
`import_sumstats`: Works fine for 100s of GWAS, then encounters this error and quickly iterates through all remaining GWAS ids without actually processing them (and, strangely…
-
hi, I might have a rather basic question. PRScsx is a great tool, and I believe that if I use one GWAS data from EUR population along with 1000G reference genotypes, and my target bim file is from the…