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Hi! I am using a Mac (BigSur) for running VMD. I ran 1us simulation in Desmond on a Linux box (copied output on Mac) and wanted to run PCA analysis. In VMD when I load the molecule (and the trajectori…
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Hi @mikeraiko I tried running plasmidverify using Pfam 30.0 database, Pfam-A.full.gz. but scripts says
Format tag is 'F6R8L2_ORNAN/163-198': unrecognized.
Current H3 format is 'HMMER3/f'. Previous…
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Thank you very much for your work on the arm platform. When I downloaded the H3-arm branch and compiled it on my computer, an error occurred. The details are as follows:
./configure --prefix=`pwd`…
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I created a fresh conda environment `interproscan_env` where I installed python, java, and perl:
```
(interproscan_env) -bash-4.1$ conda list
# packages in environment at /usr/local/devel/ANNOTATIO…
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Hi @nextgenusfs I am getting an error I don't understand when I run funannotate annotate command.
(Everything works fine from funannotate clean, sort, mask, predict and even antismash remotely.)
T…
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Hello,
I am part of an Elixir project where we describe a new pipeline from scratch using the Common Workflow Language (CWL) including Docker hints, so we can run that pipeline on a cloud eventually.…
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I created a multi-fasta file via command:
` cat myfasta1.fa myfasta2.fa > mymultifasta.fa`
then I tried to run hmmalign via the following command and I got the error:
```
hmmalign mymultifasta…
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Hi,
Trying to install version 4.1.0.. Running the `configure` script which seems to work properly:
```
Add a Search Engine:
1. Crossmatch: [ Un-configured ]
2. RMBlast: [ Un-configured…
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Hi all,
I have recently installed RepeatModeler v2.0.1 (previously I used to have the version open-1.0.11).
I used these commands to build a database and run repeatmodeler:
```
BuildDatabase -n…
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Hello,
I will be very interested to test your software as an alternative to do reciprocal blast, to recover genes of interest from differents species genomic data to get multifasta of hopefully cor…