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I appreciate your developing a fast and good assembler and following up the issues here. We are currently working on animal genomes of >4Gb with high abundance (>60%) of repetitive elements.
Here …
sighe updated
3 years ago
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I know there has been a thread about this in the past: https://github.com/trinityrnaseq/trinityrnaseq/issues/1231
but there seems to me to be an issue that isn't clearly resolved or explained.
We …
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I am running clodius aggregate on a bigwig that was mapped to a poorly assembled genome with 23k contigs. I intend to show only
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Currently there is no clear way how to specify that a sub-part (ComponentDefinition) is inserted at a specific location within another ComponentDefinition.
This would be important for the descript…
graik updated
2 years ago
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Hi
I'm interested in using Cactus to perform a multiple sequence alignment of 20 Barley genomes, each of around 4.3-5.3GBps. I plan to request access to a supercomputing facility here, but I imagin…
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Hi Saima;
FVE-novel is an excellent tool when I used it to recovering the viral genomes from the viral metagenome datasets, actually I obtained more draft genomes than using the normal workflow. He…
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can get huge for large genomes
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I used Syri to compare the two haplotypes,and the alignment method was minimap. However, the results show that there are very few Syntenic regions, and most of them are Inverted regions and Translocat…
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Hello, my colleagues and I, are using TensorQTL for our researches and we have a few questions about the corections for multiple tests when identifying trans-eQTLs.
Many papers incorrectly state th…
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Apologies, I know this isn't being actively maintained, but I'm hoping for some help. At present, PASA seems to be performing better for large non-model genomes than alternative tools.
In order to …