-
* humann nucleotide and protein database: https://github.com/galaxyproject/usegalaxy-tools/issues/855 (missing on AU/ORG)
* kraken2 - 5 toturials, multiple DBs - should all be updated to 2024 version…
-
Hi,
My data contains 133 MAGs and 7 set of metagenomic reads. All MAGs are classified into 13 microbial phyla/classes according to functional network and metabolic Sankey diagrams.
But I found tha…
-
Hello, I've used SPAdes to assemble my metagenomic datasets however two of my samples are getting stuck in the exact same place repeatedly. I was able to assemble all my samples using megahit without …
-
Consider ``cond-wf-003.cwl``
```cwl
class: Workflow
cwlVersion: v1.2
inputs:
val: int
def:
type: string
default: "Direct"
steps:
step1:
in:
in1: val
a_…
-
Steps to reproduce:
1. While logged in to Qiita, open https://qiita.ucsd.edu/study/description/10283
2. In the Data Types section, click on "Metagenomic", then click on the "ID 4953" public prep
…
-
Do you think centrifuge would be successful at classifying 16S reads from Oxford Nanopore? The nanopore reads cover the entire 16S gene (1522bp) but have a high error rate (10-15%). Have you tried …
-
Hi, I have metagenomic data (paired-end, 150 bp per reads, two ~7 Gb fastq files for one sample) of 114 samples. These samples come from surface water of a river from four seasons. I want to finally g…
-
Hi everyone,
I am currently working on a project where we want to apply R.ROSETTA to a metagenomic dataset (28 samples/objects and 121 taxa/features).
For both, the Johnson and genetic reducer, …
-
The following functions have multiple rows in the custom function hierarchy table.
Hi! My name is Ilse I want to run Burrito with these data, but it did not work, actually I already check all my f…
-
## The below issue(s) questions were raised by Pascal.
Hi,
As already discussed, there is little reason to work with the OSD raw reads (other than technical or QC questions), so within the scope of …