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- **Is your feature request related to a problem? Please describe.**
No problem, just a feature for convenience.
- **Describe the solution you'd like**
Nextflow provides a _git checkout_-free sol…
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### Description of the bug
Cannot download iGenomes because of Access ID Key invalid
Downloading plugin nf-amazon@2.5.3
ERROR ~ The AWS Access Key Id you provided does not exist in our records. (…
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Split this to two issues, since they are definitely separate problems, but this is the follow-up to #28
Our HPC has `nextflow` so I tried:
```
nextflow run /groups/adamraikes/git_repos/dmriqc_…
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Do inputs need to be wrapped in ${...} when used in a script? What is good practise?
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**ep1**
I get this output from the script, which is different to the course material. Might be good if the output number wasn't 0?
```
(nf-training) bobturner@tubby:~/nf-training$ nextflow run word…
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## Bug report
Unclear on exactly how this happened, but our code set some paths some where explicitly to “/“ or an empty string. This worked locally, however, when that code ran in AWS Batch with …
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Hi,
I noticed that poreCov crashes when running pangolin via singularity and a reasonably modern nextflow version. It seems that recent updates in the path mounting defaults of nextflow broke the de…
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### Description of the bug
Hello, I am very grateful for your development of the Sarek pipeline. This pipeline has been very helpful to me in handling WGS analysis. However, I encountered an error wh…
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Here are the general requirements for getting this done.
- [x] Define the output schema and add it to the TEMPO repo
- [ ] Add way to submit a Nextflow pipeline job
- [ ] In addition to submittin…
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Hello,
I am using NFCORE_AMPLISEQ https://github.com/nf-core/ampliseq/tree/2.10.0, and it uses DADA2. I already posted this issue to https://github.com/nf-core/ampliseq/issues/764 and they metioned t…