-
Hello,
I've run into the below error while running DBGWAS. I've skipped step 1 in this case, as there were memory issues that have have been negated by splitting the job into its individual steps.…
-
Good morning,
Masurca has generated the following pair of errors. I was wondering if they are related?
First,
```
[Tue Jul 3 18:41:15 EDT 2018] Processing pe library reads
[Tue Jul 3 19:19:34 E…
-
Hi,
I got super excited to try the new lrKalisto! But I am having some issues to generate the index for it. As I see in the methods section of the paper the _k-mer_ length should be set to 63 inste…
-
Hi!
I am running Hifiasm v0.19.5-r593 with Hifi and ultra long oxford nanopore reads. However, after a few days running the process fail (core dump). I performed a selection of onp reads, using onl…
-
Hi, I'm trying to do de novo assembly of a fungi genome that has an average size of 53Mbp.
I keep getting this error
```
[Wed Jan 29 14:52:12 CET 2020] Processing pe library reads
[Wed Jan 29 15:…
-
Hello
I am a biologist i have a problem in running metaprob2.
I followed all instructions in this link: https://github.com/frankandreace/metaprob2
when i write this code i get "permission den…
-
Hi lh3,
I have minimap output, but no minisam output. The error may be because the first step of minisam: read 0 hits; stored 0 hits and 0 sequences.
Can you help to figure out the problem? Thank yo…
-
This thread will be for updates of the `.pro` assemblies.
number of `.pro.gz` files analyzed (all of s3://serratus-public/out/21* except \*r1p\*):
**5,726,283**
number of `.fasta.gz` obtaine…
-
Hi,
Nice work on this! I initially installed the conda version: `haslr=0.8a1=py38h1c8e9b9_1` from bioconda. It seems to run fine, there are no error message, it even says that the long read assembl…
-
Hi there,
Running miniasm with seemingly good contigs and mappings (below), I'm getting unitigs where all bases are N's. How can this be improved? Thanks!
Example output ```.gfa```:
```
$ head…