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### Description of bug
Hello,
I used PhaGNC2 to classify the viral contigs, but it stopped after running for 20 hours. The log file was very long and there were several errors in it as follows:…
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We want to identify novel viruses in our lab and discussing the usage of lucaprot as well. Do you have any guidance how to improve the output by converting the rna seq (short read illumina files) into…
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Dear developer: Thank you for developing this nice tool! I want to ask some basic questions about it:
1.Can we consider the sequences belong to 'proviruses' as 'temperate virus' and the left sequence…
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Hello,
I'm encountering an issue while running the 'ViralCC' program. Specifically, the program seems to get stuck at a certain point in the process with the message "Integrative graph construction f…
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Dear developers,
I hope this message finds you well. I am reaching out to report a bug encountered while using the latest arriba v2.4.0. Upon utilizing the Dragen pipeline with version (dragen Vers…
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Hello,
Thanks for your tool.
I have observed an inconsistency between the number of viral genomes reported in the log and in the output file.
Where is this discrepancy coming from? Am I missin…
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Hi! I am trying to run the pipeline for 12 samples, with the following parameters:
`nextflow run EBI-Metagenomics/emg-viral-pipeline --fasta "./contigs_rnaSpades/*.fasta" --cores 8 -profile local,d…
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### Description of the bug
Dear all,
Thanks a lot for this wonderful tool.
I am processing shallow coverage WGS data with oncoanalyser through nf-core and experiencing an issue at the GRIDSS st…
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Hi Stephen,
Thanks for your pipeline of human gut viruses classification.
I was trying to use the uhgv-tools to classifiy viral contigs, but I have some questions about UHGV database:
![077e8d825…
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# List of Tools
## Implement?
* [VirMiner(Mining, analyzing, and integrating viral signals from metagenomic data)](https://github.com/TingtZHENG/VirMiner/)
* [Paper](https://microbiomejourna…