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Hi Christian,
I've encountered a primary issue while working with the genus Streptococcus and its bacteriophages. I have collected 136 bacterial genomes of the Streptococcus genus and 712 annotated…
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I'm using the gene_presence_absence.csv output from Roary.
When I upload my file, I get an error saying "heads up, blocks provided without a tree, so this data cannot be displayed". How can I fix …
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Hello,
I am interested in the output of your network analysis and so I loaded the edges csv file that you provided into cytoscape but couldn't reproduce the figure from your paper - the distinct cl…
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Hisat2 requires Python 2.7. Some systems don't have this installed. Document how to deploy it. Anaconda?
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Hi Dr Horesh,
Firstly, thanks for developing this tool, it’s a really neat way of categorisating the accessory genome, and very useful and usable.
When first trying out the script, I noticed tha…
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I want to represent the presence/absence matrix of the pangenome with the newick tree using gheatmap. I want presence in black and absence in white:
```
pangenome
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## Bug Report
### Affected tool(s) or class(es)
GenotypeGVCFs
### Affected version(s)
4.6.0.0
### Description
When I was doing GenotypeGVCFs from GenomicsDB of 420 samples, the process …
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Here is an accessory service that I think is needed in order to make widespread ToL re-use feasible: for a taxon T of interest to me, and a number N that is a manageable number for me (the end user), …
arlin updated
10 years ago
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Hello,
I was wondering if there is a minimum length requirement for scaffolds somewhere hard-coded in the program?
I performed a test where I compared the length of genomes before running Panseq…
MrOlm updated
7 years ago
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over on twitter, ben woodcroft [asked](https://twitter.com/wwood/status/1562255085463171073) if/when sourmash would report the relative abundance of each genome, taking into account shared k-mers.
…