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Hi,
Thanks for developing leafcutter!
I have a question regarding the alternative splicing signals on tandem duplicated genes.
I found a region that contains five tandem duplicated genes that…
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http://genes.mit.edu/burgelab/miso/annotations/ucsc_tables/hg19/ensGene.gff3
http://genes.mit.edu/burgelab/miso/annotations/ver2/miso_annotations_hg19_v2.zip
http://genes.mit.edu/burgelab/miso/a…
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Need to curate some alternative transcript examples for Chado loading
can do some from the gene expression list:
gene expression, alternative splicing (3)
gene expression, alternative transcri…
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Hi, If I only need to obtain the AS count for a single sample (experimental group or control group), I execute this command: rmats.py --b1 b2.txt --gtf isoquant_gffcompare.gtf -t paired --bi ./STAR_bi…
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Hi, thanks for your useful software, and we faced a interesting issue, maybe you can give us some advice; we have run ctat_vif to detect virus-host integration sites in both DNA and RNA sequencing dat…
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https://github.com/galaxyproject/training-material/blob/main/topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.md
Hi all -- The workflow in this tutorial doesn't play well w…
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Hello,
Is there a way to get the sequences of the isoforms after the rMATS analysis? I am trying to use rMATS to identify the sequences that has been changed due to alternative splicing. Is there …
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Hi, I aligned the transcript to the reference genome, and based on the coverage of reads, I found two alternative splicing events. However, the GTF file expanded by IsoQuant shows only one transcript …
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- Introduction to RegTools functionality. After HISAT2 alignment, QoRTs (written in Scala) performs QC but also processes RNA-seq data to produce count files needed for splicing analysis by DEXSeq and…
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I want to know, can I get the PSI for every alternative splicing event in every cell ? Because I wanted to explore the correlation between splicing factors (SF) and splicing events through the express…