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Hi Ming,
Can I kindly request for the addition of lexicons (NCBI Taxomony ID) of the following bacteria strains on the REDU sample information template?
1. Xanthomonas campestris 8004 | 314565 …
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Hi,
I get an error when reopening Nexus files saved with FigTree version 1.4.5-Pre.
Opening of Newick files is without problems but when saved as a Nexus file a full stop (.) is transformed into a c…
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Hi,
When running `mikado serialise` with BLAST tsv results I get error: `Cannot use a compiled regex as replacement pattern with regex=False`
Serialise log:
```
2024-06-13 09:30:05,071 - seria…
jolbi updated
5 months ago
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Should input a Term Document Matrix, and a list of lists (or some objects) which give a word to be the replacement followed by all the terms to be replaced.
For example we might use [["Tuburculosis…
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Hi,
I have built a custom database for kraken2 with default parameters.
When i align 16S nanopore reads with kraken2 I have the following lines in the output file.
![image](https://user-images.gi…
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Występuje problem:
- [X] z zasobem REST API / with a REST API resource
- [X] ze środowiskiem produkcyjnym / with the production environment
- [ ] ze środowiskiem testowym / with the test enviro…
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Dear @torognes, are you planning to add the sintax classifier http://biorxiv.org/content/early/2016/09/09/074161?
Thank you,
Davide
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Hello,
I need to download genome of multiple bacteria species, and to make it faster, I want to use a bash script:
`#!/bin/bash
species=(
"Bacillus anthracis"
"Bordetella bronchiseptica…
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The `strain` column isn't unique. Might need to detect this, and appened the `GCF_` number to the strain to discriminate?
```
/home/tseemann/tmp/B.cereus/human_readable/refseq/bacteria/Bacillus/c…
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I download MLST database by `download_mlst_databases` and make `export MLST_DATABASES=/export/data/user/MLSTdb`
```
(base) [user@bigmem01 STRP-2020]$ get_sequence_type -a
Achromobacter spp
Acineto…