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sanger-pathogens
/
mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
http://sanger-pathogens.github.io/mlst_check/
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Unable to download database
#95
sekhwal
opened
1 year ago
0
get_sequence_type -s "Pseudomonas aeruginosa" *.fna Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module)
#94
neelam19051
opened
2 years ago
0
mlst database
#93
buihoangphuc412
opened
3 years ago
0
Change paths for farm usage
#92
Lfulcrum
closed
3 years ago
1
No results from get_sequence_type
#91
VoronDM
opened
3 years ago
5
Perl Error while running download_mlst_databases
#90
chahatupreti
opened
4 years ago
0
Docker build fixes & perl locale fix
#89
trstickland
closed
4 years ago
0
remove path-help email from support
#88
kathryn1995
closed
4 years ago
1
readdir() attempted on invalid dirhandle
#87
hafizmtalha
closed
4 years ago
1
Added changelog
#86
ssjunnebo
closed
5 years ago
0
Rt574328 readme
#85
ssjunnebo
closed
5 years ago
0
get_sequence_types only writes N for some fasta
#84
ssjunnebo
opened
5 years ago
2
Different order of MLST alleles to Leptospira
#83
ghost
opened
5 years ago
0
add codecov
#82
ssjunnebo
closed
6 years ago
1
fix typo in badge
#81
ssjunnebo
closed
6 years ago
0
Add Docker badges to README.md
#80
ssjunnebo
closed
6 years ago
0
include bioconda instructions
#79
ssjunnebo
closed
6 years ago
0
url not found
#78
bgold04
opened
6 years ago
2
download_mlst_databases Could not connect to https://pubmlst.org/data/dbases.xml
#77
novitch
closed
6 years ago
1
574328 fix readme
#76
ssjunnebo
closed
6 years ago
0
Something went wrong, got a 500 status code at /usr/local/share/perl/5.22.2/Bio/MLST/Download/Downloadable.pm line 24.
#75
bastian-wur
closed
7 years ago
1
update email address
#74
ssjunnebo
closed
7 years ago
0
download from https
#73
andrewjpage
closed
7 years ago
0
Update lustre directory in bin scripts
#72
vaofford
closed
7 years ago
0
update 108 to 118
#71
andrewjpage
closed
7 years ago
0
Test descriptions
#70
andrewjpage
closed
7 years ago
0
updates from review
#69
andrewjpage
closed
7 years ago
0
Licence
#68
happykhan
closed
7 years ago
1
Update mlst to latest perl
#67
andrewjpage
closed
7 years ago
0
Docker
#66
andrewjpage
closed
7 years ago
0
Issue with running get_sequence_type
#65
BioMEC
closed
7 years ago
1
nds change to dist zilla starter bundle
#64
nds
closed
8 years ago
0
BUG: missing semicolon in get_emm_sequence_type script
#63
aslett1
closed
8 years ago
0
Order alleles consistently when concatonating
#62
bewt85
closed
8 years ago
0
Ignore metadata column headings in profiles
#61
bewt85
closed
8 years ago
0
[468141,463456]: Cope better with small changes to alleles
#60
bewt85
closed
9 years ago
0
Travis badge should just report master
#59
bewt85
closed
9 years ago
0
Added AUTHORS with ap13 and bt5 as authors
#58
aslett1
closed
9 years ago
0
BUG: Missing semicolon in get_sequence_type script
#57
bewt85
closed
9 years ago
0
Ticket 463462: dodgy default arguments for blast_exec and makeblastdb_exec
#56
bewt85
closed
9 years ago
0
Fix perl version in .travis.yml
#55
bewt85
closed
9 years ago
0
Hopefully adds Travis CI support
#54
bewt85
closed
9 years ago
0
Ticket 463083 Update versioning
#53
bewt85
closed
9 years ago
1
Ticket 452414 Fix false contamination
#52
bewt85
closed
9 years ago
0
Ticket 453529 Fix MLST spreadsheet output
#51
bewt85
closed
9 years ago
3
Ticket 442599 Fix database updated
#50
bewt85
closed
9 years ago
1
Fixes tests
#49
bewt85
closed
9 years ago
0
Deal with cases where allele name contains a - or _
#48
carlacummins
closed
9 years ago
0
Prevented splitting of allele names in header
#47
carlacummins
closed
9 years ago
0
pass in number of parallel processes
#46
andrewjpage
closed
10 years ago
0
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