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**Describe the bug**
The translation into protein creates an issue when the translation table is set to "11" (bacterial code).
When the start codon is NOT a canonical "ATG" (e.g., GTG), the transl…
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Hi,
I've been gratefully using ExomePeak2 for my m6A differential methylation analyses.
Although I was focusing on eukaryotic hosts, I am interested in analyzing m6A in ssRNA & dsDNA viruses, and …
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### Game Version
v1.18.7
### Platform
Windows
### Modded
Modded
### SP/MP
Singleplayer
### Description
Found hot spring bacterial mat floating in midair above a partial snow…
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Dear author, thank you for your software. Plotsr can be used to plot syntenic regions, inversions, translocations regions and duplications regions. But, I couldn't plot large deletions regions betwee…
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Hello, I am trying to find SV on bacterial genome. I tried use ProcaryaSV and I can not solve this problem from cnvnator.
[B110-LEG3394_L3_cnvnator.log](https://github.com/user-attachments/files/175…
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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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[2024-10-28 04:01:14] INFO: GTDB-Tk v2.4.0
[2024-10-28 04:01:14] INFO: gtdbtk classify_wf --genome_dir new_genome_data/ --skip_ani_screen --out_dir classify_wf_out --cpus 16
[2024-10-28 04:01:14] IN…
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So I generated sample.bam file
I also generated its sorted_sample.bam file as well
I then use msamtools
…
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Hi, not an issue but will this tool work with bacterial transcriptome? I read through the manual and couldn't find an answer. Since bacterial species don't have introns will this program have any nega…
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Can I use the Genome Hub with Ensembl bacterial genomes? How would you set the SPECIES_DB_URL and SPECIES_DBS options in this case?
Unlike eukaryotic genomes, bacterial and fungal genomes are not d…