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We try to have the minimum basic package structure. It seems like in creation at least a `dev` folder with various templates/functions gets created. This should not be in a cloned copy of the repo a…
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Hi Aaron et al,
We (@Yalbibalderas @AnaBVA) noticed that the following code from OSCA returns different t-SNE plots. Eventually we narrowed down the issue to BioC 3.11 vs 3.12 (3.13 is the same as …
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A proposal to add a new GitHub Action to automatically run `R CMD check` on the package every time a commit is made. This will help ensure that the package is always in a good state and catch any pote…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/computational-metabolomics/MetMashR
Confirm the f…
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A proposal to add issue templates to this repository to standardize the information we'd like contributors to include when they open issues. This will help maintainers and contributors to have a bette…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CogDisResLab/drugfindR
Confirm the following by e…
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We want to write a new vignette that shows how you can use `spatialLIBD` using the data from https://support.10xgenomics.com/spatial-gene-expression/datasets. I think that it can start with https://gi…
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Hi!
While installing a large number of packages from both CRAN and Bioconductor on a container running the `docker.io/rocker/r2u` image, I got some of the Bioconductor dependencies from source. I c…
aitap updated
8 months ago
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Hi BiocFileCache team,
Last week at BioC2023 I ran into some issues with `spatialLIBD::fetch_data("spatialDLPFC_Visium_modeling_results")` and related functions after I wiped out clean my BiocFileC…
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Improve liftover operation for working with GRanges. This probably should live in a new package, maybe *easylift*? I'd be happy to work with someone interested in writing their first Bioconductor pack…