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Dear Developers,
I am trying to do CAZymes analysis using my mRNA reads. I downloaded a copy of the database (CAZyDB.08062022.fa), indexed it to Diamond format, and then performed a diamond blast. …
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Hi, I was running dbcan with `--tools hmmer dbcan` to only run hmmer and dbcan_sub on our cluster but found the job created a large amount of subprocesses. I checked the codes and found a suspected se…
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Hi @linnabrown , @yinlabniu , @AaronAOliver
Thank you for a great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. My o…
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Hi Chao,
I met a problem that the bam file cann't be found when I tried to run either the test file or my real data. I have check the read address and made sure they were correct. Could you provide…
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Hello , I ran METABOLIC-C under a HPC with slurm over my acquatic metagenomic paired end reads data set (93 samples).The program was installed via mamba:
`mamba install -c hcc metabolic`
I ra…
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Hello,
I've recently been running DRAM v1.4.6 that was installed manually on a Linux server. It is running smoothly and outputting the desired files, but I am getting a warning I have never seen (s…
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Hello,
I ran funannotate annotate with the command :
funannotate annotate --gff "/shared/home/ymestiri/projects/annotation_fusarium/Funannotate/UK0001Mo.gff3" --fasta "/shared/home/ymestiri/proj…
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Hi, thanks for developing this powerful tool! I appreciate for its exceptional performance, but I encountered a specific issue while attempting to display structure (anvio's interactive stuck at still…
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### Report
hi, I have encounter issues with the estimation of CGC substrate abundance and CGC abundance.
I followed all the steps from the manual and it ran smoothly, including dbcan_utils fam_abu…
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**Are you using the latest release?**
1.8.11
**What command did you issue?**
funannotate annotate -i update_results -oannotated --eggnog $emapper_annotations --iprscan iprscan.fasta.xml --cpus 10…