-
Right now redirect_uri always uses http. This causes issues when using e.g. microsoft authentication. One needs to then specifically set `--proxy-base-url` to https e.g. https://github.com/knowledgesy…
-
**Background**:
Pathway diagrams are widely used in genomics to describe changes occurring in signaling pathways resulting from genomic alterations. There are [several tools](https://www.ncbi.nlm.n…
-
### Component(s)
cmd/otelcontribcol
### Is your feature request related to a problem? Please describe.
I am trying to set up the OpenTelemetry collector to send logs to Datadog using the Datadog ex…
-
One approach is to process the raw data into summary statistics of interest. For instance, define a list of disease types and pool all the studies for that particular disease. Then calculate the mutat…
-
https://github.com/cBioPortal/cbioportal/blob/master/docs/tutorials/cBioPortal%20Tutorial%201%20Single%20Study%20Exploration.pdf
-
Some scripts used to import data from the seed DB have been moved to cbioportal-core but still reference properties files in the main cbioportal repo. Enable them to be run via building the cbioportal…
-
**Background**:
The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a m…
-
I followed https://docs.cbioportal.org/deployment/deploy-without-docker/load-sample-cancer-study/ to import study but running into the database migration issue.
Steps to reproduce:
1. `export PORT…
-
**Suggested changes**
- [ ] All class names should use CapWords convention.
- [ ] Method `cbioportalExportStepPart.iterate_over_biomedsheets` should be broken up to follow single-responsibility pr…
-
There are some use cases for using Chromoscope with `iframe`, and I think we need to simplify the application for such use cases (cBioPortal integration and the Chromoscope Python package). For exampl…