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Hi There,
I got following issues when I was trying to run the program:
```
fasta=/data1/workspace/DCI/Kirsch/Jianguo.Huang/circRNA/bwaindex/genome.fa
gtf=/data1/Annotation/iGenome/Mus_musculus/U…
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Hi there,
I'd like to try using circompara2 to map circRNA reads in human genome for my RNAseq project. But since my project has over 1000 samples and we've already done the alignment work for mRNA b…
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**Describe the bug**
DCC quits when trying to combine individual circRNA read counts. This is only when I run it using a docker in an interactive queue:
bsub -Is -q research-hpc \
-a 'docker(budde…
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Hi there,
I'd like to try using CIRCexplorer2 to map circRNA reads in human genome. But since my project has over 1000 samples and we've already done the alignment work for mRNA by STAR aligner (whic…
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I tried to run isocirc with test data. It worked great! However, when I tried to run isocirc with my own data, it did not generate isocirc.out, isocirc_stats.out or isocirc.bed. I downloaded the fa d…
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Hi there,
I'd like to try using CIRI2 or CIRIquant to map circRNA reads in human genome. But since my project has over 1000 samples and we've already done the alignment work for mRNA by STAR aligner …
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I am not looking to do differential expression so I did not open the DE module.
However, I would still like to normalize the count data with transcript length.
Is there any way to obtain this f…
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IS there any option to resume the circompara2 comand from any last point ???
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Hello,
The CRAFT software is a power tools for me.
However, I got the following error messages when I want to use fasta file from GENCODE, which is used to find my circRNA.
`Error: The genome file …
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Dear Dr. Christina Huan Shi,
Thank you for this great software. This software is very helpful and incredibly fast. But when I run it using my own data, I got a result unexpectedly.
I ran psir…