-
Hi,
I found several TE families which were classified as TIR in early stages, but then classified as Gypsy in the final output: HiTE.out (see below). I have manually checked motifs in consensus se…
-
Hi,
Thanks for providing this tool. Is there a crate available to use this rust abPOA repository?
Thanks,
Hang
-
Hi TOAST team,
I am interested in curating the representative genomes for VOCs/VBMs. And according to your recent publication (Xiaoli, Lingzi, et al. "Benchmark datasets for SARS-CoV-2 surveillance…
-
Hi!
I would like to use TEtrimmer to curate consensus sequences coming from PANTERA pipeline which identifies TEs from pangenome polymorphisms. For this reason, many of the TE families identified b…
-
every time my instance of NGSspeciesID runs, it will never finish the medakka polishing
2 consensus formed.
Saving spoa references to files: 945021|NC_016052.1/consensus_reference_X.fasta
running m…
-
The consensus produced by `tracy` and currently output by assess_poliovirus_report covers a region larger than VP1. This should (optionally) be trimmed to the VP1 region.
-
I am not sure to understand the meaning of this statement in the IBIS technical details.
>**3 Baseline Solutions**
>
>During the Leaderboard stage, the baseline for evaluating PWMs and AAAs …
-
**Current Behavior**
There appears to be missing lineages from the https://github.com/corneliusroemer/pango-sequences/blob/main/data/pango-consensus-sequences_genome-nuc.fasta.zst file that are pre…
-
Dear pd,
Thank you for the software. When I use bcftools "consnensus genome" to get a pesudogenome with 20 chromosome numbers (genome size: about 2.5G), I only got three chromosomes and the left ones…
-
I aligned 38 sequences, average length 72, but including one outlier sequence with a length of 505 and C-terminal homology.
Same thing happens with muscle or belvu. Alignment is long , but I expe…