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Hi @sbslee
I am curious to know, are differential analyses tools like lefse, ANCOM, ALDX2, and/or DeSeq2 for microbiota data out of scope for Dokdo?
it would be wonderful to have them in Dokdo, if …
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Dear
Is there a way to link the results of each biomarker resulting from the Lefse, ancombc, metagenomeSeq and Aldex2 analyses?
I was doing an analysis of all of them and I see that some of them co…
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@lievenclement @lgatto @ococrook Thank you for a great tool! I am looking to fit a hurdle model on data I have run through DIANN. In order to do this, should I be utilizing the protein intensity value…
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I wanted to inquire if there is a way to account for covariates effects using test_differential_abundance?
Also, is there a way to support MaAsLin2 in the MicrobiotaProcess pipeline without manually …
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Hi,
I would like to know whether this tool can be used to identify multiple groups differential abundance microbes?
Thank you very much!
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Dear Eva,
I used your the PLSDA_batch function to correct a batch in the filtered count matrix of my microbiome experiment. As the following step would be to perform a compositional differential ab…
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Thanks for your tool.
I would like to do isoform-specific differential abundance analysis in GBM. I am wondering if you have a complete data set of isoform-specific transcript abundance for all the…
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Dear Yu,
Thanks for the development of this wonderful package, which can help me a lot with the microbiome data analysis. It came an error showed that "Error in get_call(obj, "classgroup") : 缺…
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Hi. Great package!
Had a question regarding performing intra-sample abundance comparisons. Do you think this is feasible/appropriate to use scCODA for?
I.e. You have a covariate that doesn't de…
n-hal updated
4 months ago