-
I think I get where the modification probabilities are coming from (ML values / 256). But if I pass a filter that's being used for both modified and canonical calls, where does the canonical base prob…
-
Dear author
I'd like to ask you a question,I used megalodon to call methylation and found that in the centromeric region, it showed a hypomethylation state,which corresponds to the peak of CHIP,Thi…
-
hi,
I split the rows whiling clustering, but it seems the order is completed messed up. Is there any setting to fix the split order?
Thank you!
```
cm = pch.ClusterMapPlotter(pd.DataFrame(r…
-
Build DNA methylation database schema and tables using results generated from . According to @ewafula, the results in are still under preparation.
Following is a brief introduction on how to build…
-
Performing this:
query_methyl
-
I am trying to run Dorado to identify 5mC methylations, but only have success when the full path to the basecaller model `dna_r10.4.1_e8.2_400bps_hac@v5.0.0` is specified (from root). The command writ…
-
Is it possible to extract features of DNA methylation from the selected TCGA tumor samples?
-
-
find all genes and isoforms associated with DNA methylation machinery in the geoduck genome.
@kubu4 do you know what file would contain the gene isoforms ?
-
Hi,
I am analyzing methylation data- finding differentially methylated sites/regions, and I wanted to inquire about suggestions whether my input is good or if I should preprocess with better softwa…