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No b0 found during Normalize_DWI process.
MRtrix dwinormalise fail :
```
Command: dwiextract 100610__dwi_cropped.nii.gz -fslgrad 100610_dwi.bvec 100610_dwi.bval -bzero - | mrmath - mean - -axis …
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I'm executing BIDS Validator v1.14.8 on a large dataset (~800GB, ~4500 files). The validator reports incorrectly the following errors:
- [ERR] You have to define 'RepetitionTime' for this file. (co…
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Basically I think we can hardcode many of the BIDS entities and target file types for ingesting preprocessed data in a YAML file.
Check out this file as an example: https://github.com/PennLINC/xcp_…
tsalo updated
1 month ago
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## Summary
I am getting an error when preprocessing dwi data with no T1w data using the latest qsiprep version.
I was able to successfully preprocess this dataset using qsiprep v0.19.1 but get an e…
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## Summary
A few thoughts:
- Phase encoding direction
- Voxel size
- TR
- Number of directions
- Number of unique bvals
tsalo updated
1 month ago
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`dcm-brno_2024-07-14` -- subjects with surgery (https://github.com/valosekj/dcm-brno/blob/main/surgery.yml)
Error logs for two subjects:
```bash
$ dcm-brno_2024-07-14/log$ ls -1 err*
err.02_pr…
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Hi @Lestropie
**Description**:
I encountered an error during the participant-level processing step using the MRtrix3 Connectome pipeline. The error suggests that the pipeline is unable to import t…
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DWI preprocessing has been a TODO in this repo for a while. Mrtrix3's combination of denoising and FSL preprocessing should still be used even when lacking RPE.
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It would be useful to know when a session has `anat`, `dwi`, `fmap`, and/or `func` data. This way different tactics could be selectively deployed in pipeline.py and bids_corrections.py. For instance, …
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Hi there, I get the following error when attempting to run the first step in the WMA pipeline (https://whitematteranalysis.readthedocs.io/en/latest/subject-specific-tractography-parcellation.html). I …